The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.
With Snakemake, data analysis workflows are defined via an easy to read, adaptable, yet powerful specification language on top of Python. Each rule describes a step in an analysis defining how to obtain output files from input files. Dependencies between rules are determined automatically.
Rapidly implement analysis steps via direct script and jupyter notebook integration. Easily create and employ re-usable tool wrappers and split your data analysis into well-separated modules.
https://snakemake.readthedocs.io/en/stable/
http://ivory.idyll.org/blog/2021-snakemake-simple-operations.html
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